P
Not Specified Permanent

Oakland, California · USA job

Senior Scientist, Analytical Development & Quality Control

Protagonist Therapeutics

Oakland, California

Job description

Overview

As a Senior Scientist in ADQC, you will shape analytical strategies for small molecules and peptides from early development through late-stage programs, driving method development, validation, and control strategies for DS/DP. You will lead internal analytics, coordinate with CDMOs, and collaborate across Drug Substance, Drug Product, QA, Regulatory, and Clinical teams to meet program goals. This role offers hands-on technical leadership in a fast-paced biotech environment and a chance to impact regulatory-ready analytics. You will work on high-impact projects that accelerate development timelines while ensuring data integrity and GMP compliance.

Compensation / Benefits
  • Health and wellness program with comprehensive coverage
  • Premium medical, dental, and vision insurance
  • 401(k) plan
  • Flexible vacation policy
  • Company-paid lunch and snacks
  • FSA options (Healthcare, Dependent Care, Commuter)
Responsibilities
  • Develop, optimize, and validate analytical methods for release, stability, and characterization of DS and DP
  • Lead impurity identification, degradant analysis, comparability assessments, method transfer, and lifecycle management
  • Establish phase-appropriate analytical control strategies with characterization plans and specifications
  • Troubleshoot analytical issues, conduct investigations (OOS/OOT, deviations, root-cause, CAPA, change control)
  • Manage stability and reference standard programs for assigned projects
  • Coordinate with CDMOs and review their data for release, stability, and characterization
  • Draft analytical sections for INDs, IMPDs, and NDAs; contribute to Module 3
  • Drive continuous improvement in processes, CDMO management practices, and SOPs in collaboration with QA
  • Represent ADQC in cross-functional meetings
Key requirements
  • PhD or MS in Analytical Chemistry or a related discipline with 5+ years in early- and late-stage CMC development
  • Hands-on UHPLC method development with diverse detectors (UV, PDA, MS, etc.)
  • Experience developing methods for synthetic peptides or complex drug substances (ADCs, PEGylated proteins, mAbs) is highly preferred
  • Proven ability to solve complex scientific and business challenges
  • Experience managing analytical development and QC activities at CDMOs
  • Strong knowledge of cGMP/GLP, pharmaceutical quality systems, and regulatory requirements
  • Excellent written and verbal communication, able to present plans to CDMOs and senior management
  • Ability to manage priorities, timelines, and risk in a fast-paced setting
  • Strong project management, leadership, and cross-functional collaboration skills
  • Travel flexibility domestically and internationally as needed
  • strong communication
  • leadership
  • cross-functional collaboration
  • UHPLC method development
  • MS-based identification and characterization
  • degradant and impurity analysis

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